Molecular Networks

Authors and titles for recent submissions

• Wed, 1 Oct 2025
• Tue, 30 Sep 2025
• Mon, 29 Sep 2025
• Fri, 26 Sep 2025
• Thu, 25 Sep 2025

See today's new changes

Tue, 30 Sep 2025 (showing 2 of 2 entries )

[2] arXiv:2509.24926 (cross-list from q-bio.MN) [cn-pdf, pdf, html, other]

Title: Bifurcations and multistability in inducible three-gene toggle switch networks Show Chinese title

Title: 可诱导的三基因切换开关网络中的分岔和多稳定性

Rebecca J. Rousseau, Rob Phillips

Comments: 32 pages, 23 figures

Subjects: Molecular Networks (q-bio.MN) ; Biological Physics (physics.bio-ph) ; Subcellular Processes (q-bio.SC)

[3] arXiv:2509.23543 (cross-list from q-bio.GN) [cn-pdf, pdf, html, other]

Title: Contrastive Learning Enhances Language Model Based Cell Embeddings for Low-Sample Single Cell Transcriptomics Show Chinese title

Title: 对比学习增强基于语言模型的细胞嵌入用于低样本单细胞转录组学

Luxuan Zhang, Douglas Jiang, Qinglong Wang, Haoqi Sun, Feng Tian

Comments: 14 pages, 4 figures, 2 tables

Subjects: Genomics (q-bio.GN) ; Neural and Evolutionary Computing (cs.NE) ; Molecular Networks (q-bio.MN)

Mon, 29 Sep 2025

No updates for this time period.

Fri, 26 Sep 2025 (showing 1 of 1 entries )

[4] arXiv:2509.20693 (cross-list from cs.LG) [cn-pdf, pdf, html, other]

Title: Learning to Align Molecules and Proteins: A Geometry-Aware Approach to Binding Affinity Show Chinese title

Title: 学习对齐分子和蛋白质：一种几何感知的结合亲和力方法

Mohammadsaleh Refahi, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen

Comments: 10pages,2 figures

Subjects: Machine Learning (cs.LG) ; Artificial Intelligence (cs.AI) ; Molecular Networks (q-bio.MN)

Thu, 25 Sep 2025 (showing 2 of 2 entries )

[5] arXiv:2509.19410 (cross-list from q-bio.MN) [cn-pdf, pdf, html, other]

Title: Meta-analysis and Topological Perturbation in Interactomic Network for Anti-opioid Addiction Drug Repurposing Show Chinese title

Title: 基于相互作用网络的元分析和拓扑扰动用于抗阿片类药物成瘾药物再利用

Chunhuan Zhang, Sean Cottrell, Benjamin Jones, Yueying Zhu, Huahai Qiu, Bengong Zhang, Tianshou Zhou, Jian Jiang

Subjects: Molecular Networks (q-bio.MN) ; Quantitative Methods (q-bio.QM)

[6] arXiv:2509.19766 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Dynamicasome: a molecular dynamics-guided and AI-driven pathogenicity prediction catalogue for all genetic mutations Show Chinese title

Title: 动态一些：一种分子动力学引导和人工智能驱动的全部遗传突变致病性预测目录

Naeyma N Islam, Mathew A Coban, Jessica M Fuller, Caleb Weber, Rohit Chitale, Benjamin Jussila, Trisha J. Brock, Cui Tao, Thomas R Caulfield

Comments: 14 pages , 6 Figures, 2 Tables

Journal-ref: Communications Biology (Nature) (2025) 8:958

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Biological Physics (physics.bio-ph) ; Molecular Networks (q-bio.MN)