Populations and Evolution

Authors and titles for June 2023

[1] arXiv:2306.00471 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Muller's ratchet in a near-critical regime: tournament versus fitness proportional selection Show Chinese title

Title: 穆勒的棘轮在近临界 regime 中：锦标赛与适应度比例选择

Jan Lukas Igelbrink, Adrián González Casanova, Charline Smadi, Anton Wakolbinger

Comments: The presentation is now focussed on the forward-in-time approach. The proof of the main result has been re-structured and expanded

Subjects: Populations and Evolution (q-bio.PE) ; Probability (math.PR)

[2] arXiv:2306.00873 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Digital contact tracing/notification for SARS-CoV-2: navigating six points of failure Show Chinese title

Title: SARS-CoV-2的数字接触追踪/通知：应对六个故障点

Joanna Masel, James Petrie, Jason Bay, Wolfgang Ebbers, Aalekh Sharan, Scott Leibrand, Andreas Gebhard, Samuel Zimmerman

Subjects: Populations and Evolution (q-bio.PE)

[3] arXiv:2306.01403 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Dynamical Theory for Adaptive Systems Show Chinese title

Title: 自适应系统的动力学理论

Tuan Minh Pham, Kunihiko Kaneko

Comments: 30 pages and 2 figures

Journal-ref: Journal of Statistical Mechanics: Theory and Experiment, (2024)

Subjects: Populations and Evolution (q-bio.PE) ; Disordered Systems and Neural Networks (cond-mat.dis-nn) ; Adaptation and Self-Organizing Systems (nlin.AO) ; Biological Physics (physics.bio-ph)

[4] arXiv:2306.01793 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Hypoxia-resistance heterogeneity in tumours: the impact of geometrical characterization of environmental niches and evolutionary trade-offs. A mathematical approach Show Chinese title

Title: 肿瘤中缺氧抗性异质性：环境生态位几何表征和进化权衡的影响 一种数学方法

Giulia Chiari, Giada Fiandaca, Marcello Edoardo Delitala

Subjects: Populations and Evolution (q-bio.PE) ; Analysis of PDEs (math.AP) ; Numerical Analysis (math.NA) ; Medical Physics (physics.med-ph)

[5] arXiv:2306.02075 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Ebola transmission dynamics: will future Ebola outbreaks become cyclic? Show Chinese title

Title: 埃博拉传播动力学：未来的埃博拉疫情会变得周期性吗？

David Niyukuri, Kelly Joelle Gatore Sinigirira, Jean De Dieu Kwizera, Salma Omar Abd-Almageid Adam

Subjects: Populations and Evolution (q-bio.PE)

[6] arXiv:2306.02100 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Microbiome abundance patterns as attractors and the implications for the inference of microbial interaction networks Show Chinese title

Title: 微生物组丰度模式作为吸引子及其对微生物相互作用网络推断的影响

Isabella-Hilda Mendler, Barbara Drossel, Marc-Thorsten Hütt

Subjects: Populations and Evolution (q-bio.PE)

[7] arXiv:2306.02510 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Intermittent migration can induce pulses of speciation in a two-island system Show Chinese title

Title: 间歇性迁移可以在两个岛屿系统中引发物种形成脉冲

Débora Princepe, Simone Czarnobai, Rodrigo A. Caetano, Flavia M. D. Marquitti, Marcus A. M. de Aguiar, Sabrina B. L. Araujo

Comments: 18 pages, 4 figures

Subjects: Populations and Evolution (q-bio.PE)

[8] arXiv:2306.02893 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Branching model with state dependent offspring distribution for Chlamydia spread Show Chinese title

Title: 具有状态依赖后代分布的分枝模型用于衣原体传播

Péter Kevei, Máté Szalai

Comments: 16 pages

Subjects: Populations and Evolution (q-bio.PE) ; Applications (stat.AP)

[9] arXiv:2306.04776 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: A quantitative theory of viral-immune coevolution is within reach Show Chinese title

Title: 病毒-免疫系统协同进化的定量理论即将实现

Thierry Mora, Aleksandra Walczak

Subjects: Populations and Evolution (q-bio.PE)

[10] arXiv:2306.05555 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Impact of resource distributions on the competition of species in stream environment Show Chinese title

Title: 资源分布对河流环境中物种竞争的影响

Tung D. Nguyen, Yixiang Wu, Tingting Tang, Amy Veprauskas, Ying Zhou, Behzad Djafari Rouhani, Zhisheng Shuai

Comments: 32 pages

Subjects: Populations and Evolution (q-bio.PE) ; Dynamical Systems (math.DS)

[11] arXiv:2306.05739 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees Show Chinese title

Title: 通过树空间跳跃：根树和无根树的连续系统发育推断

Matthew J Penn, Neil Scheidwasser, Joseph Penn, Christl A Donnelly, David A Duchêne, Samir Bhatt

Comments: 26 pages, 3 figures, 2 tables, 20 supplementary pages, 3 supplementary figures

Journal-ref: Genome Biol. Evol. 15 (2023) evad213

Subjects: Populations and Evolution (q-bio.PE) ; Machine Learning (cs.LG)

[12] arXiv:2306.05984 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Noncoding RNAs evolutionarily extend animal lifespan Show Chinese title

Title: 非编码RNAs进化地延长动物寿命

Anyou Wang

Comments: 13 pages and 4 figures

Subjects: Populations and Evolution (q-bio.PE)

[13] arXiv:2306.06298 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Progress on Constructing Phylogenetic Networks for Languages Show Chinese title

Title: 语言系统发生网络的构建进展

Tandy Warnow, Steven N. Evans, Luay Nakhleh

Comments: 16 pages, 2 figures

Subjects: Populations and Evolution (q-bio.PE) ; Applications (stat.AP)

[14] arXiv:2306.06407 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Effect of the degree of an initial mutant in Moran processes in structured populations Show Chinese title

Title: 结构种群中Moran过程初始突变体程度的影响

Javad Mohamadichamgavi, Jacek Miȩkisz

Comments: 11 pages, 13 figures

Journal-ref: Phys. Rev. E 109, 044406 (2024)

Subjects: Populations and Evolution (q-bio.PE)

[15] arXiv:2306.06450 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Movement bias in asymmetric landscapes and its impact on population distribution and critical habitat size Show Chinese title

Title: 不对称景观中的运动偏差及其对种群分布和关键栖息地大小的影响

Vivian Dornelas, Pablo de Castro, Justin M. Calabrese, William F. Fagan, Ricardo Martinez-Garcia

Comments: 21 pages, 8 figures

Subjects: Populations and Evolution (q-bio.PE) ; Biological Physics (physics.bio-ph)

[16] arXiv:2306.06519 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Phylogenetic network classes through the lens of expanding covers Show Chinese title

Title: 通过扩展覆盖的视角看系统发育网络类别

Andrew Francis, Daniele Marchei, Mike Steel

Comments: 21 pages, 6 figures. Version 2 fixes an error in Fig 6, clarifies some statements, and corrects some typos

Journal-ref: J. Math. Biol. 88, 58 (2024)

Subjects: Populations and Evolution (q-bio.PE) ; Combinatorics (math.CO)

[17] arXiv:2306.07447 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Stability and Fluctuations in Complex Ecological Systems Show Chinese title

Title: 复杂生态系统中的稳定性和波动性

Eric Forgoston, Sarah Day, Peter C. de Ruiter, Arjen Doelman, Nienke Hartemink, Alan Hastings, Lia Hemerik, Alexandru Hening, Josef Hofbauer, Sonia Kefi, David A. Kessler, Toni Klauschies, Christian Kuehn, Xiaoxiao Li, John C. Moore, Elly Morrien, Anje-Margriet Neutel, Jelena Pantel, Sebastian J. Schreiber, Leah B. Shaw, Nadav Shnerb, Eric Siero, Laura S. Storch, Michael A.S. Thorne, Ingrid van de Leemput, Ellen van Velzen, Els Weinans

Comments: 22 pages

Subjects: Populations and Evolution (q-bio.PE)

[18] arXiv:2306.07491 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Exact sharp-fronted solutions for nonlinear diffusion on evolving domains Show Chinese title

Title: 非线性扩散在演化域上的精确尖锐前沿解

Stuart T. Johnston, Matthew J. Simpson

Subjects: Populations and Evolution (q-bio.PE)

[19] arXiv:2306.08752 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Dynamics of infectious diseases in predator-prey populations: a stochastic model, sustainability, and invariant measure Show Chinese title

Title: 捕食者-猎物种群中传染病的动力学：随机模型、可持续性与不变测度

Yujie Gao, Malay Banerjee, Ton Viet Ta

Subjects: Populations and Evolution (q-bio.PE) ; Dynamical Systems (math.DS)

[20] arXiv:2306.09193 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Population growth in discrete time: a renewal equation oriented survey Show Chinese title

Title: 离散时间的人口增长：面向再生方程的综述

B. Boldin, O. Diekmann, J.A.J. Metz

Subjects: Populations and Evolution (q-bio.PE) ; Dynamical Systems (math.DS)

[21] arXiv:2306.09221 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Survival of the flattest in the quasispecies model Show Chinese title

Title: 准物种模型中扁平的生存

Maxime Berger, Raphaël Cerf

Journal-ref: Adv. Appl. Probab. 57 (2025) 566-606

Subjects: Populations and Evolution (q-bio.PE) ; Probability (math.PR)

[22] arXiv:2306.09768 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Comparing intervention measures in a model of a disease outbreak on a university campus Show Chinese title

Title: 比较大学校园疾病爆发模型中的干预措施

Alex Best, Prerna Singh

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph)

[23] arXiv:2306.10040 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Hypoxia-related radiotherapy resistance in tumours: treatment efficacy investigation in an eco-evolutionary perspective Show Chinese title

Title: 肿瘤缺氧相关的放疗耐受性：从生态进化角度对治疗效果的研究

Giulia Chiari, Giada Fiandaca, Marcello Edoardo Delitala

Journal-ref: Front. Appl. Math. Stat., 13 July 2023 Sec. Mathematical Biology

Subjects: Populations and Evolution (q-bio.PE) ; Medical Physics (physics.med-ph) ; Tissues and Organs (q-bio.TO)

[24] arXiv:2306.10879 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Frequent asymmetric migrations suppress natural selection in spatially structured populations Show Chinese title

Title: 频繁的非对称迁移抑制空间结构种群中的自然选择

Alia Abbara, Anne-Florence Bitbol

Comments: 11 pages of main text, 27 pages of Supplementary material

Journal-ref: PNAS Nexus 2(11): pgad392 (2023)

Subjects: Populations and Evolution (q-bio.PE) ; Biological Physics (physics.bio-ph)

[25] arXiv:2306.10953 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: The Impact of Rising Ocean Acidification Levels on Fish Migration Show Chinese title

Title: 海洋酸化水平上升对鱼类迁徙的影响

Asuna Gilfoyle, Willow Baird

Subjects: Populations and Evolution (q-bio.PE)

[26] arXiv:2306.11003 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Agent-based modeling of the COVID-19 pandemic in Florida Show Chinese title

Title: 基于代理的佛罗里达州新冠疫情建模

Alexander N. Pillai, Kok Ben Toh, Dianela Perdomo, Sanjana Bhargava, Arlin Stoltzfus, Ira M. Longini Jr., Carl A. B. Pearson, Thomas J. Hladish

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph)

[27] arXiv:2306.11031 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Chaotic turnover of rare and abundant species in a strongly interacting model community Show Chinese title

Title: 稀有和丰富物种在强相互作用模型群落中的混沌翻转

Emil Mallmin, Arne Traulsen, Silvia De Monte

Comments: 15 pages, 7 figures

Journal-ref: PNAS 121(11) e2312822121, 2024

Subjects: Populations and Evolution (q-bio.PE) ; Statistical Mechanics (cond-mat.stat-mech)

[28] arXiv:2306.11609 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Error-induced extinction in a multi-type critical birth-death process Show Chinese title

Title: 错误引起的多类型临界出生-死亡过程中的灭绝

Meritxell Brunet Guasch, P. L. Krapivsky, Tibor Antal

Comments: 34 pages, 7 figures

Subjects: Populations and Evolution (q-bio.PE) ; Probability (math.PR)

[29] arXiv:2306.11622 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: grenedalf: population genetic statistics for the next generation of pool sequencing Show Chinese title

Title: grenedalf：下一代池测序的人口遗传统计学

Lucas Czech, Jeffrey P. Spence, Moisés Expósito-Alonso

Subjects: Populations and Evolution (q-bio.PE) ; Genomics (q-bio.GN)

[30] arXiv:2306.11818 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Pattern formation in a predator-prey model with Allee effect and hyperbolic mortality on networked and non-networked environments Show Chinese title

Title: 网络和非网络环境中具有阿尔勒效应和双曲死亡率的捕食者-被捕食者模型中的模式形成

Yong Ye, Jiaying Zhou

Comments: 24 pages, 9 figures, submitted to Nonlinear Analysis: Modelling and Control

Subjects: Populations and Evolution (q-bio.PE) ; Dynamical Systems (math.DS)

[31] arXiv:2306.13300 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Impacts of seasonality and parasitism on honey bee population dynamics Show Chinese title

Title: 季节性和寄生对蜜蜂种群动态的影响

Jun Chen, Jordy O Rodriguez Rincon, Gloria DeGrandi-Hoffman, Jennifer Fewell, Jon Harrison, Yun Kang

Subjects: Populations and Evolution (q-bio.PE) ; Dynamical Systems (math.DS)

[32] arXiv:2306.13433 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Unveiling the dynamics of canard cycles and global behaviour in a singularly perturbed predator-prey system with Allee effect in predator Show Chinese title

Title: 揭示具有捕食者阿尔利效应的奇异摄动捕食者-被捕食系统中飞鱼环周期和全局行为的动力学特性

Tapan Saha, Pallav Jyoti Pal

Comments: 26 pages, 13 figures

Subjects: Populations and Evolution (q-bio.PE) ; Dynamical Systems (math.DS)

[33] arXiv:2306.13438 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Artificial Neural Network Prediction of COVID-19 Daily Infection Count Show Chinese title

Title: 人工神经网络预测 COVID-19 每日感染人数

Ning Jiang, Charles Kolozsvary, Yao Li

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph)

[34] arXiv:2306.13449 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Large system population dynamics with non-Gaussian interactions Show Chinese title

Title: 具有非高斯相互作用的大系统种群动力学

Sandro Azaele, Amos Maritan

Subjects: Populations and Evolution (q-bio.PE) ; Disordered Systems and Neural Networks (cond-mat.dis-nn) ; Statistical Mechanics (cond-mat.stat-mech)

[35] arXiv:2306.13633 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Optimal Vaccination Policy to Prevent Endemicity: A Stochastic Model Show Chinese title

Title: 预防流行性的最优疫苗接种政策：一个随机模型

Félix Foutel-Rodier, Arthur Charpentier, Hélène Guérin

Comments: 51 pages, 7 figures

Subjects: Populations and Evolution (q-bio.PE) ; Probability (math.PR)

[36] arXiv:2306.13634 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Many-species ecological fluctuations as a jump process from the brink of extinction Show Chinese title

Title: 多种群生态波动作为灭绝边缘的跳跃过程

Thibaut Arnoulx de Pirey, Guy Bunin

Subjects: Populations and Evolution (q-bio.PE) ; Disordered Systems and Neural Networks (cond-mat.dis-nn) ; Statistical Mechanics (cond-mat.stat-mech)

[37] arXiv:2306.14329 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Superinfection and the hypnozoite reservoir for Plasmodium vivax: a general framework Show Chinese title

Title: 间日疟原虫超级感染和休眠子库：一个通用框架

Somya Mehra, James M. McCaw, Peter G. Taylor

Subjects: Populations and Evolution (q-bio.PE)

[38] arXiv:2306.14667 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Measuring unequal distribution of pandemic severity across census years, variants of concern and interventions Show Chinese title

Title: 测量疫情严重程度在人口普查年份、关注变体和干预措施之间的不平等分布

Quang Dang Nguyen, Sheryl L. Chang, Christina M. Jamerlan, Mikhail Prokopenko

Comments: 43 pages, 25 figures, source code: https://zenodo.org/record/5778218

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph)

[39] arXiv:2306.14926 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Analysis of Control Measures for Vector-borne Diseases Using a Multistage Vector Model with Multi-Host Sub-populations Show Chinese title

Title: 基于多阶段向量模型与多宿主子种群的媒介传播疾病控制措施分析

Francis G. T. Kamba, Leonard C. Eze, Jean Claude Kamgang, Christopher P. Thron

Comments: 42 pages, 3 figures. arXiv admin note: substantial text overlap with arXiv:1808.07574

Subjects: Populations and Evolution (q-bio.PE)

[40] arXiv:2306.15379 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Survival, extinction, and interface stability in a two--phase moving boundary model of biological invasion Show Chinese title

Title: 生存、灭绝和界面稳定性在生物入侵的两相移动边界模型中

Matthew J Simpson, Nizhum Rahman, Scott W McCue, Alexander KY Tam

Comments: 36 pages. 10 figures

Subjects: Populations and Evolution (q-bio.PE) ; Analysis of PDEs (math.AP) ; Pattern Formation and Solitons (nlin.PS) ; Biological Physics (physics.bio-ph)

[41] arXiv:2306.15428 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Evaluating The Impact Of Species Specialisation On Ecological Network Robustness Using Analytic Methods Show Chinese title

Title: 使用分析方法评估物种特化对生态网络鲁棒性的影响

Chris Jones, Damaris Zurell, Karoline Wiesner

Comments: 22 pages, 12 figures, 2 tables

Subjects: Populations and Evolution (q-bio.PE) ; Combinatorics (math.CO) ; Physics and Society (physics.soc-ph)

[42] arXiv:2306.16432 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Modelling coevolutionary dynamics in heterogeneous SI epidemiological systems across scales Show Chinese title

Title: 在不同尺度的异质SI流行病系统中建模共进化动力学

Tommaso Lorenzi, Elisa Paparelli, Andrea Tosin

Journal-ref: Commun. Math. Sci., 22(8):2131-2165, 2024

Subjects: Populations and Evolution (q-bio.PE)

[43] arXiv:2306.17259 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Infomap Bioregions 2 - Exploring the interplay between biogeography and evolution Show Chinese title

Title: Infomap 生物区域 2 - 探索生物地理学与进化之间的相互作用

Daniel Edler, Anton Holmgren, Alexis Rojas, Joaquín Calatayud, Martin Rosvall, Alexandre Antonelli

Subjects: Populations and Evolution (q-bio.PE) ; Quantitative Methods (q-bio.QM)

[44] arXiv:2306.17331 (cross-list from q-bio.PE) [cn-pdf, pdf, html, other]

Title: Computation of random time-shift distributions for stochastic population models Show Chinese title

Title: 随机时间位移分布的计算对于随机种群模型

Dylan Morris, John Maclean, Andrew J. Black

Comments: 46 pages, 10 figures

Journal-ref: J. Math. Biol. 89, 33 (2024)

Subjects: Populations and Evolution (q-bio.PE) ; Probability (math.PR)

[45] arXiv:2306.17566 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Imputing phylogenetic trees using tropical polytopes over the space of phylogenetic trees Show Chinese title

Title: 使用热带多面体在系统发育树空间中进行系统发育树填补

Ruriko Yoshida

Subjects: Populations and Evolution (q-bio.PE)

[46] arXiv:2306.00130 (cross-list from math.PR) [cn-pdf, pdf, html, other]

Title: The ancestral selection graph for a $Λ$-asymmetric Moran model Show Chinese title

Title: 一个$Λ$-不对称Moran模型的祖先选择图

Adrián González Casanova, Noemi Kurt, José Luis Pérez

Comments: Substantially revised. The results are unchanged with respect to v1, but the presentation has been changed. References added and corrected

Subjects: Probability (math.PR) ; Populations and Evolution (q-bio.PE)

[47] arXiv:2306.03512 (cross-list from math.PR) [cn-pdf, pdf, html, other]

Title: The mutation process on the ancestral line under selection Show Chinese title

Title: 选择作用下祖先线上的突变过程

Ellen Baake, Enrico Di Gaspero, Fernando Cordero

Comments: 31 pages, 14 figures

Journal-ref: Theor. Popul. Biol. 158 (2024), 60-75

Subjects: Probability (math.PR) ; Populations and Evolution (q-bio.PE)

[48] arXiv:2306.03539 (cross-list from math.PR) [cn-pdf, pdf, other]

Title: Bernoulli factories and duality in Wright-Fisher and Allen-Cahn models of population genetics Show Chinese title

Title: 伯努利工厂与种群遗传学的Wright-Fisher和Allen-Cahn模型中的对偶性

Jere Koskela, Krzysztof Łatuszyński, Dario Spanò

Comments: 11 pages, 1 figure

Subjects: Probability (math.PR) ; Populations and Evolution (q-bio.PE)

[49] arXiv:2306.03829 (cross-list from cond-mat.dis-nn) [cn-pdf, pdf, html, other]

Title: Small-Coupling Dynamic Cavity: a Bayesian mean-field framework for epidemic inference Show Chinese title

Title: 小耦合动态腔：一种用于流行病推断的贝叶斯平均场框架

Alfredo Braunstein, Giovanni Catania, Luca Dall'Asta, Matteo Mariani, Fabio Mazza, Mattia Tarabolo

Comments: 28 pages, 11 figures, 2 tables (including appendices)

Journal-ref: Phys. Rev. Res. 7(2), 023089 (2025)

Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn) ; Statistical Mechanics (cond-mat.stat-mech) ; Data Analysis, Statistics and Probability (physics.data-an) ; Populations and Evolution (q-bio.PE)

[50] arXiv:2306.04407 (cross-list from math.DS) [cn-pdf, pdf, html, other]

Title: A Mathematical Model for Co-infection Dynamics of Pneumocystis Pneumonia and HIV/AIDS with Treatment Show Chinese title

Title: 一种针对肺炎衣原体肺炎和艾滋病共同感染动力学的数学模型及治疗

Michael Byamukama, Damian Kajunguri, Martin Karuhanga

Comments: 28 pages, 7 figures

Journal-ref: Science Journal of Applied Mathematics and Statistics, 12(4), 48-63 (2024)

Subjects: Dynamical Systems (math.DS) ; Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[51] arXiv:2306.05302 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: Emergent circulation patterns from anonymized mobility data: Clustering Italy in the time of Covid Show Chinese title

Title: 从匿名移动数据中出现的循环模式：疫情时期的意大利聚类

Jules Morand, Shoichi Yip, Yannis Velegrakis, Gianluca Lattanzi, Raffaello Potestio, Luca Tubiana

Comments: 24 pages, 16 figures

Subjects: Physics and Society (physics.soc-ph) ; Social and Information Networks (cs.SI) ; Populations and Evolution (q-bio.PE)

[52] arXiv:2306.07789 (cross-list from stat.ME) [cn-pdf, pdf, other]

Title: Stochastic differential equation for modelling health related quality of life Show Chinese title

Title: 用于模拟健康相关生活质量的随机微分方程

Ralph Brinks

Comments: 7 pages, 3 figures

Subjects: Methodology (stat.ME) ; Populations and Evolution (q-bio.PE)

[53] arXiv:2306.08096 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Statistical inference of the rates of cell proliferation and phenotypic switching in cancer Show Chinese title

Title: 癌细胞增殖和表型转换率的统计推断

Einar Bjarki Gunnarsson, Jasmine Foo, Kevin Leder

Comments: 45 pages, 11 figures, accepted for publication in Journal of Theoretical Biology

Journal-ref: Journal of Theoretical Biology, 568 (2023), 111497

Subjects: Quantitative Methods (q-bio.QM) ; Populations and Evolution (q-bio.PE)

[54] arXiv:2306.08142 (cross-list from math.PR) [cn-pdf, pdf, html, other]

Title: Latent mutations in the ancestries of alleles under selection Show Chinese title

Title: 选择下等位基因祖先中的隐性突变

Wai-Tong Louis Fan, John Wakeley

Comments: 47 pages, 3 figures

Subjects: Probability (math.PR) ; Populations and Evolution (q-bio.PE)

[55] arXiv:2306.08796 (cross-list from math.CO) [cn-pdf, pdf, html, other]

Title: Tropical Logistic Regression Model on Space of Phylogenetic Trees Show Chinese title

Title: 热带逻辑回归模型在系统发育树空间上

Georgios Aliatimis, Ruriko Yoshida, Burak Boyaci, James A. Grant

Subjects: Combinatorics (math.CO) ; Populations and Evolution (q-bio.PE)

[56] arXiv:2306.09024 (cross-list from cond-mat.stat-mech) [cn-pdf, pdf, other]

Title: Heterogeneity can markedly increase final outbreak size in the SIR model of epidemics Show Chinese title

Title: 异质性可以在流行病的SIR模型中显著增加最终爆发规模

Alexander Leibenzon, Michael Assaf

Comments: 5 pages, 3 figures

Subjects: Statistical Mechanics (cond-mat.stat-mech) ; Populations and Evolution (q-bio.PE)

[57] arXiv:2306.09534 (cross-list from q-bio.CB) [cn-pdf, pdf, other]

Title: The Core & Periphery Hypothesis: A Conceptual Basis for Generality in Cell and Developmental Biology Show Chinese title

Title: 核心与边缘假说：细胞和发育生物学中普遍性的概念基础

Elisa Gallo, Stefano De Renzis, James Sharpe, Roberto Mayor, Jonas Hartmann

Comments: 35 pages, 5 figures

Journal-ref: Cell Systems 15:9 (2024) 790-807

Subjects: Cell Behavior (q-bio.CB) ; Populations and Evolution (q-bio.PE) ; Subcellular Processes (q-bio.SC)

[58] arXiv:2306.09991 (cross-list from cs.NE) [cn-pdf, pdf, other]

Title: Evolutionary Algorithms in the Light of SGD: Limit Equivalence, Minima Flatness, and Transfer Learning Show Chinese title

Title: 进化算法在SGD视角下的研究：极限等价性、极小值平坦性和迁移学习

Andrei Kucharavy, Rachid Guerraoui, Ljiljana Dolamic

Comments: To be published in ALIFE 2023; 16 pages, 10 figures, 1 listing

Subjects: Neural and Evolutionary Computing (cs.NE) ; Machine Learning (cs.LG) ; Populations and Evolution (q-bio.PE)

[59] arXiv:2306.12457 (cross-list from cs.LG) [cn-pdf, pdf, other]

Title: Deep Dynamic Epidemiological Modelling for COVID-19 Forecasting in Multi-level Districts Show Chinese title

Title: 深度动态流行病学模型用于多级区域的 COVID-19 预测

Ruhan Liu, Jiajia Li, Yang Wen, Huating Li, Ping Zhang, Bin Sheng, David Dagan Feng

Subjects: Machine Learning (cs.LG) ; Artificial Intelligence (cs.AI) ; Populations and Evolution (q-bio.PE)

[60] arXiv:2306.13430 (cross-list from cond-mat.dis-nn) [cn-pdf, pdf, other]

Title: Ultrametric identities in glassy models of Natural Evolution Show Chinese title

Title: 玻璃模型中的超度量恒等式

Elena Agliari, Francesco Alemanno, Miriam Aquaro, Adriano Barra

Journal-ref: J. Phys. A: Math. Theor. 56, 385001, 2023

Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn) ; Populations and Evolution (q-bio.PE)

[61] arXiv:2306.13571 (cross-list from nlin.PS) [cn-pdf, pdf, html, other]

Title: Rethinking tipping points in spatial ecosystems Show Chinese title

Title: 重新思考空间生态系统的临界点

Swarnendu Banerjee, Mara Baudena, Paul Carter, Robbin Bastiaansen, Arjen Doelman, Max Rietkerk

Subjects: Pattern Formation and Solitons (nlin.PS) ; Populations and Evolution (q-bio.PE)

[62] arXiv:2306.13666 (cross-list from math.DS) [cn-pdf, pdf, other]

Title: Exploring unique dynamics in a predator-prey model with generalist predator and group defence in prey Show Chinese title

Title: 探索具有广食性捕食者和群体防御的捕食者-被捕食者模型中的独特动力学

Vaibhava Srivastava, Kwadwo Antwi-Fordjour, Rana D. Parshad

Subjects: Dynamical Systems (math.DS) ; Analysis of PDEs (math.AP) ; Populations and Evolution (q-bio.PE)

[63] arXiv:2306.14078 (cross-list from math.OC) [cn-pdf, pdf, other]

Title: Stabilization of Age-Structured Chemostat Hyperbolic PDE with Actuator Dynamics Show Chinese title

Title: 序结构化 chemostat 偏微分方程的执行器动力学稳定化

Paul-Erik Haacker, Iasson Karafyllis, Miroslav Krstić, Mamadou Diagne

Subjects: Optimization and Control (math.OC) ; Systems and Control (eess.SY) ; Populations and Evolution (q-bio.PE)

[64] arXiv:2306.15011 (cross-list from math.DS) [cn-pdf, pdf, other]

Title: A two-strain model of infectious disease spread with asymmetric temporary immunity periods and partial cross-immunity Show Chinese title

Title: 一种具有不对称暂时免疫力期和部分交叉免疫力的两种菌株传染病传播模型

Matthew D. Johnston, Bruce Pell, David A. Rubel

Comments: 29 pages, 18 figures

Subjects: Dynamical Systems (math.DS) ; Populations and Evolution (q-bio.PE)

[65] arXiv:2306.17250 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: Generalized contact matrices for epidemic modeling Show Chinese title

Title: 用于流行病建模的广义接触矩阵

Adriana Manna, Lorenzo Dall'Amico, Michele Tizzoni, Marton Karsai, Nicola Perra

Subjects: Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[66] arXiv:2306.17376 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: Identifying Bridges and Catalysts for Persistent Cooperation Using Network-Based Approach Show Chinese title

Title: 基于网络的方法识别持续合作的桥梁和催化剂

Xingru Chen, Feng Fu

Comments: 6 pages, 5 figures

Subjects: Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[67] arXiv:2306.17527 (cross-list from physics.soc-ph) [cn-pdf, pdf, html, other]

Title: Comparing temporal and aggregated network descriptions of fluid transport in the Mediterranean Sea Show Chinese title

Title: 比较地中海海水运输的时间和汇总的网络描述

Kishor Acharya, Javier Aguilar, Lorenzo Dall'Amico, Kyriacos Nicolaou, Sandro Meloni, Enrico Ser-Giacomi

Subjects: Physics and Society (physics.soc-ph) ; Fluid Dynamics (physics.flu-dyn) ; Populations and Evolution (q-bio.PE)