Populations and Evolution

Authors and titles for June 2021

[1] arXiv:2106.00384 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: A review of matrix SIR Arino epidemic models Show Chinese title

Title: 矩阵SIR Arino流行病模型的综述

Florin Avram, Rim Adenane, David I. Ketcheson

Subjects: Populations and Evolution (q-bio.PE) ; Classical Analysis and ODEs (math.CA)

[2] arXiv:2106.01602 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: The SIR model towards he data. One year of Covid-19 pandemic in Italy case study and plausible "real" numbers Show Chinese title

Title: 针对数据的SIR模型。 以意大利新冠疫情一年为例的研究及可能的“真实”数字

Ignazio Lazzizzera

Subjects: Populations and Evolution (q-bio.PE)

[3] arXiv:2106.01857 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Environment driven oscillation in an off-lattice May--Leonard model Show Chinese title

Title: 环境驱动的离格May–Leonard模型中的振荡现象

D. Bazeia, M. J. B. Ferreira, B.F. de Oliveira, A. Szolnoki

Comments: 10 pages, 5 figures, accepted for publication in Scientific Reports

Journal-ref: Scientific Reports 11 (2021) 12512

Subjects: Populations and Evolution (q-bio.PE) ; Statistical Mechanics (cond-mat.stat-mech) ; Physics and Society (physics.soc-ph)

[4] arXiv:2106.01867 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Plasticity as a link between spatially explicit, distance-independent, and whole-stand forest growth models Show Chinese title

Title: 塑性作为空间显式、距离无关和全林生长模型之间的联系

Oscar García

Comments: 9 pages, 8 figures. Submitted manuscript. Version 2 with minor changes: expanded caption in Fig. 2, new Fig. 6, corrected Wikipedia reference, fix typos

Journal-ref: Forest Science 68(1), 1-7. 2022

Subjects: Populations and Evolution (q-bio.PE) ; Applications (stat.AP)

[5] arXiv:2106.02085 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Simulation of deterministic compartmental models for infectious diseases dynamics Show Chinese title

Title: 确定性分室模型在传染病动力学中的模拟

Antonio M Batista, Silvio L T Souza, Kelly C Iarosz, Alexandre C L Almeida, José D Szezech, Enrique C Gabrick, Michele Mugnaine, Gefferson L dos Santos, Iberê L Caldas

Subjects: Populations and Evolution (q-bio.PE) ; Biological Physics (physics.bio-ph)

[6] arXiv:2106.03667 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Acceleration of Evolutionary Processes by Learning and Extended Fisher's Fundamental Theorem Show Chinese title

Title: 通过学习加速进化过程和扩展的费希尔基本定理

So Nakashima, Tetsuya J. Kobayashi

Comments: 19 pages, 4 figures

Subjects: Populations and Evolution (q-bio.PE)

[7] arXiv:2106.03713 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: The evolving usefulness of the Test-Negative Design in studying risk factors for COVID-19 due to changes in testing policy Show Chinese title

Title: 由于检测政策的变化，测试阴性设计在研究COVID-19风险因素方面的 evolving 有用性

Jan P Vandenbroucke, Elizabeth B Brickley, Christina M.J.E. Vandenbroucke-Grauls, Neil Pearce

Comments: 3 pages

Subjects: Populations and Evolution (q-bio.PE) ; Methodology (stat.ME)

[8] arXiv:2106.04085 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Assessing the impact of social activity permissiveness on the COVID-19 infection curve of several countries Show Chinese title

Title: 评估社交活动宽容度对多个国家COVID-19感染曲线的影响

Gerardo L. Febres

Comments: 17 pages, 6 Figures, 3 Tables, Figures for 38 countries in the Appendix

Subjects: Populations and Evolution (q-bio.PE)

[9] arXiv:2106.04859 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Universality and herd immunity threshold : Revisiting the SIR model for COVID-19 Show Chinese title

Title: 普遍性和群体免疫阈值：重新审视COVID-19的SIR模型

Sourav Chowdhury, Suparna Roychowdhury, Indranath Chaudhuri

Comments: 32 pages, 70 figures, published in IJMPC

Journal-ref: International Journal of Modern Physics C (2021) 2150128

Subjects: Populations and Evolution (q-bio.PE) ; Biological Physics (physics.bio-ph)

[10] arXiv:2106.05122 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Modelling lockdown measures in epidemic outbreaks using selective socio-economic containment with uncertainty Show Chinese title

Title: 利用带不确定性的选择性社会经济遏制措施建模疫情爆发中的封锁措施

Giacomo Albi, Lorenzo Pareschi, Mattia Zanella

Subjects: Populations and Evolution (q-bio.PE) ; Optimization and Control (math.OC)

[11] arXiv:2106.06070 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Allee effect in models of interacting species Show Chinese title

Title: 相互作用物种模型中的阿利效应

Marcelo N Kuperman, Guillermo Abramson

Subjects: Populations and Evolution (q-bio.PE) ; Biological Physics (physics.bio-ph)

[12] arXiv:2106.06348 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Impact of the mesoscale structure of a bipartite ecological interaction network on its robustness through a probabilistic modeling Show Chinese title

Title: 二分生态互作网络的中尺度结构对其鲁棒性的影响通过概率建模

Saint-Clair Chabert-Liddell, Pierre Barbillon, Sophie Donnet

Subjects: Populations and Evolution (q-bio.PE) ; Applications (stat.AP) ; Methodology (stat.ME)

[13] arXiv:2106.06377 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: An age-structured SEIR model for COVID--19 incidence in Dublin, Ireland with framework for evaluating health intervention cost Show Chinese title

Title: 针对都柏林，爱尔兰的 COVID-19 发病情况的年龄结构 SEIR 模型，以及评估健康干预成本的框架

Fatima-Zahra Jaouimaa, Daniel Dempsey, Suzanne van Osch, Stephen Kinsella, Kevin Burke, Jason Wyse, James Sweeney

Subjects: Populations and Evolution (q-bio.PE) ; General Economics (econ.GN) ; Physics and Society (physics.soc-ph)

[14] arXiv:2106.06727 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Comparing the topology of phylogenetic network generators Show Chinese title

Title: 比较系统发生网络生成器的拓扑结构

Remie Janssen, Pengyu Liu

Subjects: Populations and Evolution (q-bio.PE) ; Combinatorics (math.CO) ; Probability (math.PR)

[15] arXiv:2106.07206 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Stability and selective extinction in complex mutualistic networks Show Chinese title

Title: 复杂互惠网络中的稳定性与选择性灭绝

Hyun Woo Lee, Jae Woo Lee, Deok-Sun Lee

Comments: 7 figures

Journal-ref: Physical Review E 105, 014309 (2022)

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph)

[16] arXiv:2106.07262 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Spatial spread of COVID-19 outbreak in Italy using multiscale kinetic transport equations with uncertainty Show Chinese title

Title: 基于多尺度动能传输方程的意大利新冠疫情空间传播研究

Giulia Bertaglia, Walter Boscheri, Giacomo Dimarco, Lorenzo Pareschi

Journal-ref: Math. Biosci. Eng. 18 (2021) 7028-7059

Subjects: Populations and Evolution (q-bio.PE) ; Numerical Analysis (math.NA) ; Physics and Society (physics.soc-ph)

[17] arXiv:2106.07292 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Topological data analysis identifies emerging adaptive mutations in SARS-CoV-2 Show Chinese title

Title: 拓扑数据分析识别出SARS-CoV-2中的新兴适应性突变

Michael Bleher, Lukas Hahn, Maximilian Neumann, Juan Angel Patino-Galindo, Mathieu Carriere, Ulrich Bauer, Raul Rabadan, Andreas Ott

Comments: Major revisions; new analyses added

Subjects: Populations and Evolution (q-bio.PE) ; Computational Geometry (cs.CG) ; Genomics (q-bio.GN) ; Quantitative Methods (q-bio.QM)

[18] arXiv:2106.08048 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Epidemic modelling of multiple virus strains: a case study of SARS-CoV-2 B.1.1.7 in Moscow Show Chinese title

Title: 多重病毒株的流行病建模：莫斯科B.1.1.7变异株案例研究

Boris Tseytlin, Ilya Makarov

Subjects: Populations and Evolution (q-bio.PE) ; Machine Learning (cs.LG) ; Applications (stat.AP)

[19] arXiv:2106.08106 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: CoV-Spectrum: Analysis of globally shared SARS-CoV-2 data to Identify and Characterize New Variants Show Chinese title

Title: CoV-Spectrum：全球共享的SARS-CoV-2数据分析以识别和表征新变种

Chaoran Chen, Sarah Nadeau, Michael Yared, Philippe Voinov, Ning Xie, Cornelius Roemer, Tanja Stadler

Subjects: Populations and Evolution (q-bio.PE)

[20] arXiv:2106.08120 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Qualitative analysis of a mathematical model for Xylella fastidiosa epidemics Show Chinese title

Title: Xylella fastidiosa流行病学数学模型的定性分析

Edoardo Beretta, Vincenzo Capasso, Simone Scacchi, Matteo Brunetti, Matteo Montagna

Subjects: Populations and Evolution (q-bio.PE) ; Dynamical Systems (math.DS)

[21] arXiv:2106.08327 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: A SEIRUC mathematical model for transmission dynamics of COVID-19 Show Chinese title

Title: 一种用于 COVID-19 传播动力学的 SEIRUC 数学模型

P. Tamilalagan, B. Krithika, P. Manivannan

Comments: 19 pages, 5 figures

Subjects: Populations and Evolution (q-bio.PE) ; Dynamical Systems (math.DS)

[22] arXiv:2106.08820 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: A Modified SEIR Model for the Spread of COVID-19 Considering Different Vaccine Types Show Chinese title

Title: 一种考虑不同疫苗类型的改进的SEIR模型用于新冠病毒的传播

Aram Ansary Ogholbake, Hana Khamfroush

Subjects: Populations and Evolution (q-bio.PE)

[23] arXiv:2106.08991 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Virus-immune dynamics determined by prey-predator interaction network and epistasis in viral fitness landscape Show Chinese title

Title: 病毒-免疫动力学由猎物-捕食者相互作用网络和病毒适应度景观中的上位效应决定

Cameron J. Browne, Fadoua Yahia

Subjects: Populations and Evolution (q-bio.PE)

[24] arXiv:2106.09927 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: A symmetry-inclusive algebraic approach to genome rearrangement Show Chinese title

Title: 包含对称性的代数方法用于基因组重排

Venta Terauds, Joshua Stevenson, Jeremy Sumner

Comments: Revised version: appendices added. 18 pages

Subjects: Populations and Evolution (q-bio.PE) ; Rings and Algebras (math.RA)

[25] arXiv:2106.10041 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: The language of race, ethnicity, and ancestry in human genetic research Show Chinese title

Title: 种族、族裔和祖先在人类遗传研究中的语言

Ewan Birney, Michael Inouye, Jennifer Raff, Adam Rutherford, Aylwyn Scally

Subjects: Populations and Evolution (q-bio.PE)

[26] arXiv:2106.10313 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Identifying Mitigation Strategies for COVID-19 Superspreading on Flights using Models that Account for Passenger Movement Show Chinese title

Title: 使用考虑乘客移动的模型识别航班上新冠超级传播的缓解策略

Sirish Namilae, Yuxuan Wu, Anuj Mubayi, Ashok Srinivasan, Matthew Scotch

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph) ; Quantitative Methods (q-bio.QM)

[27] arXiv:2106.10384 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Effect of time-dependent infectiousness on epidemic dynamics Show Chinese title

Title: 时间依赖性传染性对流行病动力学的影响

Nicholas Landry

Comments: 8 pages, 5 figures

Journal-ref: Physical Review E 104, 064302 (2021)

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph)

[28] arXiv:2106.10772 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Conflicts, Assortative Matching, and the Evolution of Signaling Norms Show Chinese title

Title: 冲突、同性匹配与信号规范的演变

Ethan Holdahl, Jiabin Wu

Comments: 27 page, 11 figures

Subjects: Populations and Evolution (q-bio.PE) ; Theoretical Economics (econ.TH)

[29] arXiv:2106.11070 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: A Flexible Agent-Based Model to Study COVID-19 Outbreak -- A Generic Approach Show Chinese title

Title: 基于代理的灵活模型研究 COVID-19 流行——一种通用方法

Anik Burman, Sayak Chatterjee, Pramit Ghosh, Indranil Mukhokadhyay

Comments: 6 pages, 4 figures, 1 table, 1 video

Subjects: Populations and Evolution (q-bio.PE)

[30] arXiv:2106.11129 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: The Effectiveness of Strategies to Contain SARS-CoV-2: Testing, Vaccinations, and NPIs Show Chinese title

Title: 针对SARS-CoV-2的控制策略的有效性：检测、疫苗接种和非药物干预措施

Janoś Gabler, Tobias Raabe, Klara Röhrl, Hans-Martin von Gaudecker

Subjects: Populations and Evolution (q-bio.PE) ; General Economics (econ.GN)

[31] arXiv:2106.11745 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: A behavioural modelling approach to assess the impact of COVID-19 vaccine hesitancy Show Chinese title

Title: 一种行为建模方法来评估新冠疫苗犹豫的影响

Bruno Buonomo, Rossella Della Marca, Alberto d'Onofrio, Maria Groppi

Subjects: Populations and Evolution (q-bio.PE) ; Social and Information Networks (cs.SI) ; Physics and Society (physics.soc-ph)

[32] arXiv:2106.12823 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: An activation-clearance model for Plasmodium vivax malaria Show Chinese title

Title: 一种间日疟原虫激活清除模型

Somya Mehra, James M. McCaw, Mark B. Flegg, Peter G. Taylor, Jennifer A. Flegg

Comments: This is a pre-copyedit version of an article published in Bulletin of Mathematical Biology. The final authenticated version is available online at: https://doi.org/10.1007/s11538-020-00706-1

Journal-ref: Bull Math Biol 82, 32 (2020)

Subjects: Populations and Evolution (q-bio.PE)

[33] arXiv:2106.13146 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: High fraction of silent recombination in a finite population two-locus neutral birth-death-mutation model Show Chinese title

Title: 有限种群两座位中性出生-死亡-突变模型中的高比例沉默重组

Akiva Bruno Melka, Yoram Louzoun

Comments: 12 pages, 7 figures

Journal-ref: Phys. Rev. E 106, 024409 (2022)

Subjects: Populations and Evolution (q-bio.PE)

[34] arXiv:2106.13527 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Alternating active-dormitive strategy enables overtaking by disadvantaged prey through Parrondo's paradox Show Chinese title

Title: 交替的主动-休眠策略通过帕罗多悖论使处于劣势的猎物实现超越

Tao Wen, Eugene V. Koonin, Kang Hao Cheong

Subjects: Populations and Evolution (q-bio.PE) ; Chaotic Dynamics (nlin.CD)

[35] arXiv:2106.14236 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Stochastic clonal dynamics and genetic turnover in exponentially growing populations Show Chinese title

Title: 随机克隆动力学和指数增长种群中的遗传转变

Arman Angaji, Christoph Velling, Johannes Berg

Comments: 15 pages

Journal-ref: J. Stat. Mech. 103502 (2021)

Subjects: Populations and Evolution (q-bio.PE)

[36] arXiv:2106.14982 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Epidemiological theory of virus variants Show Chinese title

Title: 病毒变异的流行病学理论

Giacomo Cacciapaglia, Corentin Cot, Adele de Hoffer, Stefan Hohenegger, Francesco Sannino, Shahram Vatani

Comments: 38 pages, 32 figures

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph)

[37] arXiv:2106.15928 (cross-list from q-bio.PE) [cn-pdf, pdf, other]

Title: Reinfection and low cross-immunity as drivers of epidemic resurgence under high seroprevalence: a model-based approach with application to Amazonas, Brazil Show Chinese title

Title: 高血清阳性率下再感染和低交叉免疫作为疫情再次上升的驱动因素：基于模型的方法及其在巴西亚马逊州的应用

Edilson F. Arruda, Dayse H. Pastore, Claudia M. Dias, Fabricio O. Ourique

Subjects: Populations and Evolution (q-bio.PE) ; Physics and Society (physics.soc-ph)

[38] arXiv:2106.00307 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: The Effect of Weekend Curfews on Epidemics: A Monte Carlo Simulation Show Chinese title

Title: 周末宵禁对流行病的影响：蒙特卡罗模拟

Hakan Kaygusuz, A. Nihat Berker

Comments: Published version, 14 pages, 6 figures

Journal-ref: Turk. J. Biology 45, 436-441 (2021)

Subjects: Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[39] arXiv:2106.00959 (cross-list from physics.bio-ph) [cn-pdf, pdf, other]

Title: Impact of Variable Speed on Collective Movement of Animal Groups Show Chinese title

Title: 变量速度对动物群体集体运动的影响

Pascal P. Klamser, Luis Gómez-Nava, Tim Landgraf, Jolle W. Jolles, David Bierbach, Pawel Romanczuk

Comments: 16 pages, 6 figures

Subjects: Biological Physics (physics.bio-ph) ; Populations and Evolution (q-bio.PE)

[40] arXiv:2106.02020 (cross-list from q-bio.GN) [cn-pdf, pdf, other]

Title: There are no valid points of criticism in Tyshkovskiy and Panchin's response (10.1002/bies.202000325) to our paper "The genetic structure of SARS-CoV-2 does not rule out a laboratory origin" (DOI: 10.1002/bies.202000240) Show Chinese title

Title: 在Tyshkovskiy和Panchin对我们论文“SARS-CoV-2的遗传结构并不排除实验室起源”（DOI: 10.1002/bies.202000240）的回应（10.1002/bies.202000325）中，没有有效的批评点。

Yuri Deigin, Rossana Segreto

Comments: 9 pages, 2 figures

Subjects: Genomics (q-bio.GN) ; Populations and Evolution (q-bio.PE)

[41] arXiv:2106.02419 (cross-list from cond-mat.stat-mech) [cn-pdf, pdf, other]

Title: Emergent spatial patterns of coexistence in species-rich plant communities Show Chinese title

Title: 物种丰富植物群落中共生的涌现空间模式

Pablo Villegas, Tommaso Gili, Guido Caldarelli

Comments: 7 pages, 5 figures, and Supp. Inf

Journal-ref: Phys. Rev. E 104, 034305 (2021)

Subjects: Statistical Mechanics (cond-mat.stat-mech) ; Disordered Systems and Neural Networks (cond-mat.dis-nn) ; Biological Physics (physics.bio-ph) ; Populations and Evolution (q-bio.PE)

[42] arXiv:2106.02441 (cross-list from q-bio.BM) [cn-pdf, pdf, other]

Title: Modeling sequence-space exploration and emergence of epistatic signals in protein evolution Show Chinese title

Title: 蛋白质进化中序列空间探索与上位信号出现的建模

Matteo Bisardi, Juan Rodriguez-Rivas, Francesco Zamponi, Martin Weigt

Comments: 16 pages, 14 figures

Journal-ref: Molecular Biology and Evolution 39, msab321 (2022)

Subjects: Biomolecules (q-bio.BM) ; Disordered Systems and Neural Networks (cond-mat.dis-nn) ; Populations and Evolution (q-bio.PE) ; Quantitative Methods (q-bio.QM)

[43] arXiv:2106.02603 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: Study on the effects of the restrictive measures for containment of the COVID-19 pandemic on the reproduction number $R_t$ in Italian regions Show Chinese title

Title: 对意大利各地区 COVID-19 大流行控制的限制措施对再生数$R_t$的影响研究

Gianluca Bonifazi, Luca Lista, Dario Menasce, Mauro Mezzetto, Daniele Pedrini, Roberto Spighi, Antonio Zoccoli

Subjects: Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[44] arXiv:2106.02724 (cross-list from stat.ME) [cn-pdf, pdf, other]

Title: Statistical summaries of unlabelled evolutionary trees and ranked hierarchical clustering trees Show Chinese title

Title: 无标签进化树和排名分层聚类树的统计摘要

Samyak Rajanala, Julia A. Palacios

Comments: 46 pages, 16 figures

Subjects: Methodology (stat.ME) ; Populations and Evolution (q-bio.PE)

[45] arXiv:2106.03553 (cross-list from cs.GT) [cn-pdf, pdf, other]

Title: Playing with words: Do people exploit loaded language to affect others' decisions for their own benefit? Show Chinese title

Title: 玩弄词语：人们是否会利用带有情绪色彩的语言来影响他人的决定以谋取自身利益？

Valerio Capraro, Andrea Vanzo, Antonio Cabrales

Comments: in press at Judgment and Decision Making

Subjects: Computer Science and Game Theory (cs.GT) ; Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[46] arXiv:2106.04359 (cross-list from math.AP) [cn-pdf, pdf, other]

Title: Spreading properties for SIR models on homogeneous trees Show Chinese title

Title: SIR模型在齐次树上的传播特性

Christophe Besse (IMT), Grégory Faye (IMT)

Subjects: Analysis of PDEs (math.AP) ; Populations and Evolution (q-bio.PE)

[47] arXiv:2106.04436 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: Cooperation and competition between pair and multi-player social games in spatial populations Show Chinese title

Title: 对 spatial populations 中成对和多玩家社会游戏之间的合作与竞争

Attila Szolnoki, Xiaojie Chen

Comments: 18 pages, preprint format, 6 figures, accepted for publication in Sci. Rep

Journal-ref: Scientific Reports 11 (2021) 12101

Subjects: Physics and Society (physics.soc-ph) ; Statistical Mechanics (cond-mat.stat-mech) ; Computer Science and Game Theory (cs.GT) ; Populations and Evolution (q-bio.PE)

[48] arXiv:2106.04705 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: Calibrating COVID-19 SEIR models with time-varying effective contact rates Show Chinese title

Title: 校准具有时变有效接触率的 COVID-19 SEIR 模型

James P. Gleeson, Thomas Brendan Murphy, Joseph D. O'Brien, Nial Friel, Norma Bargary, David J. P. O'Sullivan

Journal-ref: Phil. Trans. R. Soc. A 380: 20210120. (2021)

Subjects: Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[49] arXiv:2106.06918 (cross-list from stat.ME) [cn-pdf, pdf, other]

Title: A Phylogenetic Trees Analysis of SARS-CoV-2 Show Chinese title

Title: SARS-CoV-2的系统发育树分析

Chen Shen, Vic Patrangenaru, Roland Moore

Comments: 22 pages, 16 figures

Subjects: Methodology (stat.ME) ; Populations and Evolution (q-bio.PE)

[50] arXiv:2106.07919 (cross-list from eess.SP) [cn-pdf, pdf, other]

Title: A stochastic metapopulation state-space approach to modeling and estimating Covid-19 spread Show Chinese title

Title: 一种随机元种群状态空间方法用于建模和估计新冠疫情的传播

Yukun Tan, Durward Cator III, Martial Ndeffo-Mbah, Ulisses Braga-Neto

Comments: 17 pages, 5 figures

Subjects: Signal Processing (eess.SP) ; Social and Information Networks (cs.SI) ; Populations and Evolution (q-bio.PE)

[51] arXiv:2106.08205 (cross-list from math.DS) [cn-pdf, pdf, other]

Title: Population Growth and Competition Models with Decay and Competition Consistent Delay Show Chinese title

Title: 带有衰减和竞争一致延迟的人口增长与竞争模型

Chiu-Ju Lin, Ting-Hao Hsu, Gail S. K. Wolkowicz

Comments: 22 pages, 6 figures, 1 table

Subjects: Dynamical Systems (math.DS) ; Populations and Evolution (q-bio.PE)

[52] arXiv:2106.08591 (cross-list from cs.SI) [cn-pdf, pdf, other]

Title: Quality-Quantity Trade-offs in Tests for Management of COVID-19-like Epidemics Show Chinese title

Title: 质量-数量权衡在管理类似 COVID-19 流行病测试中的应用

Harish Sasikumar, Manoj Varma

Comments: The contents are prepared as a report with figures and graphs at their appropriate positions. All the figures are captioned properly and are explained in the main text. The references are all in IEEE format. Section from pages 21 to 31 forms the appendix

Subjects: Social and Information Networks (cs.SI) ; Dynamical Systems (math.DS) ; Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[53] arXiv:2106.08966 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: Social stress drives the multi-wave dynamics of COVID-19 outbreaks Show Chinese title

Title: 社会压力驱动 COVID-19 流行的多波动态

I.A. Kastalskiy, E.V. Pankratova, E.M. Mirkes, V.B. Kazantsev, A.N. Gorban

Comments: Minor corrections, enriched discussion and extended bibliography

Journal-ref: Sci Rep 11, 22497 (2021)

Subjects: Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[54] arXiv:2106.09528 (cross-list from math.OC) [cn-pdf, pdf, other]

Title: Optimal control strategies to tailor antivirals for acute infectious diseases in the host Show Chinese title

Title: 针对宿主体内急性传染病的抗病毒药物定制最优控制策略

Mara Perez, Pablo Abuin, Marcelo Actis, Antonio Ferramosca, Esteban A. Hernandez-Vargas, Alejandro H. Gonzalez

Subjects: Optimization and Control (math.OC) ; Populations and Evolution (q-bio.PE)

[55] arXiv:2106.10610 (cross-list from cs.AI) [cn-pdf, pdf, other]

Title: Discrepancies in Epidemiological Modeling of Aggregated Heterogeneous Data Show Chinese title

Title: 聚集异质数据的流行病学模型中的差异

Anna L. Trella, Peniel N. Argaw, Michelle M. Li, James A. Hay

Comments: Accepted to IJCAI 2021 Workshop on Artificial Intelligence for Social Good

Subjects: Artificial Intelligence (cs.AI) ; Populations and Evolution (q-bio.PE) ; Applications (stat.AP)

[56] arXiv:2106.10765 (cross-list from stat.ME) [cn-pdf, pdf, other]

Title: Dynamic group testing to control and monitor disease progression in a population Show Chinese title

Title: 动态群组检测用于控制和监测人群中的疾病进展

Sundara Rajan Srinivasavaradhan, Pavlos Nikolopoulos, Christina Fragouli, Suhas Diggavi

Subjects: Methodology (stat.ME) ; Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[57] arXiv:2106.11236 (cross-list from cs.CV) [cn-pdf, pdf, other]

Title: Can poachers find animals from public camera trap images? Show Chinese title

Title: 偷猎者能从公共相机陷阱图像中找到动物吗？

Sara Beery, Elizabeth Bondi

Comments: CV4Animals Workshop at CVPR 2021

Subjects: Computer Vision and Pattern Recognition (cs.CV) ; Artificial Intelligence (cs.AI) ; Populations and Evolution (q-bio.PE)

[58] arXiv:2106.11799 (cross-list from q-bio.GN) [cn-pdf, pdf, other]

Title: BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes Show Chinese title

Title: BUSCO更新：新的和简化的流程，以及更广泛和更深入的系统发育覆盖，用于真核生物、原核生物和病毒基因组的评分

Mosè Manni, Matthew R Berkeley, Mathieu Seppey, Felipe A Simao, Evgeny M Zdobnov

Comments: for supplementary files, see https://gitlab.com/ezlab/busco_preprint_2021

Subjects: Genomics (q-bio.GN) ; Populations and Evolution (q-bio.PE)

[59] arXiv:2106.11969 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Coupling Bayesian theory and static acoustic detector data to model bat motion and locate roosts Show Chinese title

Title: 将贝叶斯理论与静态声学探测器数据结合以模拟蝙蝠运动并定位巢穴

Lucy Henley, Owen Jones, Fiona Mathews, Thomas E. Woolley

Subjects: Quantitative Methods (q-bio.QM) ; Dynamical Systems (math.DS) ; Populations and Evolution (q-bio.PE)

[60] arXiv:2106.12057 (cross-list from cond-mat.stat-mech) [cn-pdf, pdf, other]

Title: Multivariate Generating Functions for Information Spread on Multi-Type Random Graphs Show Chinese title

Title: 多变量生成函数在多类型随机图上的信息传播

Yaron Oz, Ittai Rubinstein, Muli Safra

Comments: 27 pages, 4 figures

Subjects: Statistical Mechanics (cond-mat.stat-mech) ; Populations and Evolution (q-bio.PE)

[61] arXiv:2106.12064 (cross-list from stat.AP) [cn-pdf, pdf, other]

Title: Assessing epidemic curves for evidence of superspreading Show Chinese title

Title: 评估流行曲线以寻找超级传播的证据

Joe Meagher, Nial Friel

Subjects: Applications (stat.AP) ; Populations and Evolution (q-bio.PE)

[62] arXiv:2106.12234 (cross-list from math.OC) [cn-pdf, pdf, other]

Title: Agent-based modeling of COVID-19 outbreaks for New York state, UK and Novosibirsk region Show Chinese title

Title: 基于代理的 COVID-19 爆发建模，针对纽约州、英国和托木斯克地区

Olga Krivorotko, Mariia Sosnovskaia, Ivan Vashchenko, Cliff Kerr, Daniel Lesnic

Comments: 48 pages, 27 figures

Subjects: Optimization and Control (math.OC) ; Dynamical Systems (math.DS) ; Populations and Evolution (q-bio.PE)

[63] arXiv:2106.13463 (cross-list from math.PR) [cn-pdf, pdf, other]

Title: Unified modelling of epidemics by coupled dynamics via Monte-Carlo Markov Chain algorithms Show Chinese title

Title: 通过蒙特卡洛马尔可夫链算法的耦合动力学对流行病进行统一建模

Frédéric Protin (IMT), Martel Jules, Duc Thang Nguyen, Hang T.T. Nguyen, Charles Piffault, Willy Rodríguez, Susely Figueroa Iglesias, Tat Dat Tô, Wilderich Tuschmann, Hông Vân Lê, Tenan Yeo, Tien Zung Nguyen

Subjects: Probability (math.PR) ; Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[64] arXiv:2106.14480 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: An SIR-like kinetic model tracking individuals' viral load Show Chinese title

Title: 一种跟踪个体病毒载量的类似SIR的动力学模型

Rossella Della Marca, Nadia Loy, Andrea Tosin

Comments: 20 pages, 5 figures

Journal-ref: Netw. Heterog. Media, 17(3):467-494, 2022

Subjects: Physics and Society (physics.soc-ph) ; Statistical Mechanics (cond-mat.stat-mech) ; Dynamical Systems (math.DS) ; Populations and Evolution (q-bio.PE)

[65] arXiv:2106.14664 (cross-list from physics.soc-ph) [cn-pdf, pdf, other]

Title: Final size and partial distance estimate for the SEIRD model Show Chinese title

Title: 最终规模和SEIRD模型的部分距离估计

Alison M. V. D. L. Melo, Matheus C. Santos

Comments: 22 pages, 5 figures

Subjects: Physics and Society (physics.soc-ph) ; Populations and Evolution (q-bio.PE)

[66] arXiv:2106.14985 (cross-list from physics.med-ph) [cn-pdf, pdf, other]

Title: Sensitivity of airborne transmission of enveloped viruses to seasonal variation in indoor relative humidity Show Chinese title

Title: 包膜病毒空气传播对室内相对湿度季节性变化的敏感性

Alison Robey, Laura Fierce

Journal-ref: International Communications in Heat and Mass Transfer, 2022

Subjects: Medical Physics (physics.med-ph) ; Populations and Evolution (q-bio.PE)

[67] arXiv:2106.15381 (cross-list from stat.AP) [cn-pdf, pdf, other]

Title: Place of Occurrence of COVID-19 Deaths in the UK: Modelling and Analysis Show Chinese title

Title: 英国新冠死亡病例的发生地：建模与分析

Spencer A. Thomas

Subjects: Applications (stat.AP) ; Populations and Evolution (q-bio.PE)

[68] arXiv:2106.15407 (cross-list from math.DS) [cn-pdf, pdf, other]

Title: Mathematical Analysis of a Fractional COVID-19 Model Applied to Wuhan, Spain and Portugal Show Chinese title

Title: 分数阶 COVID-19 模型在武汉、西班牙和葡萄牙的应用数学分析

Faical Ndairou, Delfim F. M. Torres

Comments: This is a preprint of a paper whose final and definite form is published Open Access in 'Axioms', available in [https://doi.org/10.3390/axioms10030135]. Please cite this article as: F. Nda\"irou and D. F. M. Torres, Mathematical Analysis of a Fractional COVID-19 Model Applied to Wuhan, Spain and Portugal, Axioms 10 (2021), no. 3, Art. 135, 13 pp

Journal-ref: Axioms 10 (2021), no. 3, Art. 135, 13 pp

Subjects: Dynamical Systems (math.DS) ; Populations and Evolution (q-bio.PE)

[69] arXiv:2106.15732 (cross-list from q-bio.MN) [cn-pdf, pdf, other]

Title: Does Collective Genetic Regulation exist? Show Chinese title

Title: 集体遗传调控是否存在？

J. M. Deutsch

Comments: 5 pages, 0 figures

Subjects: Molecular Networks (q-bio.MN) ; Populations and Evolution (q-bio.PE)

[70] arXiv:2106.15988 (cross-list from stat.AP) [cn-pdf, pdf, other]

Title: Group Testing under Superspreading Dynamics Show Chinese title

Title: 超级传播动态下的群组检测

Stratis Tsirtsis, Abir De, Lars Lorch, Manuel Gomez-Rodriguez

Subjects: Applications (stat.AP) ; Machine Learning (cs.LG) ; Populations and Evolution (q-bio.PE)