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定量生物学 > 生物大分子

arXiv:1608.01912v3 (q-bio)
[提交于 2016年8月5日 (v1) ,最后修订 2017年5月24日 (此版本, v3)]

标题: DNA类似$-$电荷吸引和在二价共$-$离子存在下二价反离子的过量充电

标题: DNA like$-$charge attraction and overcharging by divalent counterions in the presence of divalent co$-$ions

Authors:Nguyen Viet Duc, Toan T. Nguyen, Paolo Carloni
摘要: Strongly correlated electrostatics of DNA systems has drawn the interest of many groups, especially the condensation and overcharging of DNA by multivalent counterions. By adding counterions of different valencies and shapes, one can enhance or reduce DNA overcharging. In this papers, we focus on the effect of multivalent co-ions, specifically divalent co-ions such as SO$_4^{2-}$. A computational experiment of DNA condensation using Monte$-$Carlo simulation in grand canonical ensemble is carried out where DNA system is in equilibrium with a bulk solution containing a mixture of salt of different valency of co-ions. Compared to system with purely monovalent co-ions, the influence of divalent co-ions shows up in multiple aspects. Divalent co-ions lead to an increase of monovalent salt in the DNA condensate. Because monovalent salts mostly participate in linear screening of electrostatic interactions in the system, more monovalent salt molecules enter the condensate leads to screening out of short-range DNA$-$DNA like charge attraction and weaker DNA condensation free energy. The overcharging of DNA by multivalent counterions is also reduced in the presence of divalent co$-$ions. Strong repulsions between DNA and divalent co-ions and among divalent co-ions themselves leads to a {\em 耗尽} of negative ions near DNA surface as compared to the case without divalent co-ions. 在远距离处,DNA$-$DNA 的排斥相互作用在二价共$-$离子存在时更强,这表明二价共$-$离子的作用不仅仅是简单的更强线性屏蔽。
摘要: Strongly correlated electrostatics of DNA systems has drawn the interest of many groups, especially the condensation and overcharging of DNA by multivalent counterions. By adding counterions of different valencies and shapes, one can enhance or reduce DNA overcharging. In this papers, we focus on the effect of multivalent co-ions, specifically divalent co-ions such as SO$_4^{2-}$. A computational experiment of DNA condensation using Monte$-$Carlo simulation in grand canonical ensemble is carried out where DNA system is in equilibrium with a bulk solution containing a mixture of salt of different valency of co-ions. Compared to system with purely monovalent co-ions, the influence of divalent co-ions shows up in multiple aspects. Divalent co-ions lead to an increase of monovalent salt in the DNA condensate. Because monovalent salts mostly participate in linear screening of electrostatic interactions in the system, more monovalent salt molecules enter the condensate leads to screening out of short-range DNA$-$DNA like charge attraction and weaker DNA condensation free energy. The overcharging of DNA by multivalent counterions is also reduced in the presence of divalent co$-$ions. Strong repulsions between DNA and divalent co-ions and among divalent co-ions themselves leads to a {\em depletion} of negative ions near DNA surface as compared to the case without divalent co-ions. At large distance, the DNA$-$DNA repulsive interaction is stronger in the presence of divalent co$-$ions, suggesting that divalent co$-$ions role is not only that of simple stronger linear screening.
评论: 10页,6图
主题: 生物大分子 (q-bio.BM) ; 软凝聚态物理 (cond-mat.soft); 生物物理 (physics.bio-ph)
引用方式: arXiv:1608.01912 [q-bio.BM]
  (或者 arXiv:1608.01912v3 [q-bio.BM] 对于此版本)
  https://doi.org/10.48550/arXiv.1608.01912
通过 DataCite 发表的 arXiv DOI
期刊参考: J. Biol. Phys. (2017)
相关 DOI: https://doi.org/10.1007/s10867-017-9443-x
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提交历史

来自: Toan T. Nguyen [查看电子邮件]
[v1] 星期五, 2016 年 8 月 5 日 15:17:43 UTC (162 KB)
[v2] 星期二, 2016 年 8 月 16 日 04:40:44 UTC (128 KB)
[v3] 星期三, 2017 年 5 月 24 日 16:20:57 UTC (490 KB)
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