Quantitative Methods

Authors and titles for September 2025

[1] arXiv:2509.00123 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Friend or Foe Show Chinese title

Title: 朋友还是敌人

Oleksandr Cherendichenko, Josephine Solowiej-Wedderburn, Laura M. Carroll, Eric Libby

Subjects: Quantitative Methods (q-bio.QM) ; Machine Learning (cs.LG)

[2] arXiv:2509.01565 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Enabling Down Syndrome Research through a Knowledge Graph-Driven Analytical Framework Show Chinese title

Title: 通过知识图谱驱动的分析框架促进唐氏综合征研究

Madan Krishnamurthy, Surya Saha, Pierrette Lo, Patricia L. Whetzel, Tursynay Issabekova, Jamed Ferreris Vargas, Jack DiGiovanna, Melissa A Haendel

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Databases (cs.DB) ; Machine Learning (cs.LG)

[3] arXiv:2509.01817 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa Show Chinese title

Title: 共生原生动物的 taxis 和 kinesis 特性的随机分析

Yonatan L. Ashenafi, Peter R. Kramer

Subjects: Quantitative Methods (q-bio.QM) ; Biological Physics (physics.bio-ph)

[4] arXiv:2509.02255 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Raman Spectroscopy for the Early Detection of Huanglongbing and Citrus Canker in Plants: A Review Show Chinese title

Title: 拉曼光谱在植物黄龙病和柑橘溃疡病早期检测中的应用：综述

Ashis Kumar Das, Shikha Sharma, Snehprabha Gujarathi, Sushmita Mena, Saurav Bharadwaj

Subjects: Quantitative Methods (q-bio.QM)

[5] arXiv:2509.02265 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Optical Spectroscopic Imaging for Early Detection of Salinity Stress in Plants: A Review Show Chinese title

Title: 光学光谱成像在植物盐胁迫早期检测中的应用：综述

Ramji Gupta, Snehprabha Gujrathi, Swati Sharma, Saurav Bharadwaj

Subjects: Quantitative Methods (q-bio.QM)

[6] arXiv:2509.02282 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Exploring accuracy and uncertainty quantification in physics-informed neural networks for inferring microbial community dynamics Show Chinese title

Title: 探索物理信息神经网络在推断微生物群落动力学中的准确性与不确定性量化

Pedro Fontanarrosa, Chris P Barnes

Subjects: Quantitative Methods (q-bio.QM)

[7] arXiv:2509.02594 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: OpenAIs HealthBench in Action: Evaluating an LLM-Based Medical Assistant on Realistic Clinical Queries Show Chinese title

Title: OpenAI的HealthBench实战：在真实临床查询上评估基于大模型的医疗助手

Sandhanakrishnan Ravichandran, Shivesh Kumar, Rogerio Corga Da Silva, Miguel Romano, Reinhard Berkels, Michiel van der Heijden, Olivier Fail, Valentine Emmanuel Gnanapragasam

Comments: 13 pages, two graphs

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Emerging Technologies (cs.ET) ; Information Retrieval (cs.IR)

[8] arXiv:2509.02606 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Lessons Learned from Deploying Adaptive Machine Learning Agents with Limited Data for Real-time Cell Culture Process Monitoring Show Chinese title

Title: 从在实时细胞培养过程监测中部署具有有限数据的自适应机器学习代理中获得的经验教训

Thanh Tung Khuat, Johnny Peng, Robert Bassett, Ellen Otte, Bogdan Gabrys

Subjects: Quantitative Methods (q-bio.QM) ; Machine Learning (cs.LG)

[9] arXiv:2509.02610 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Resilient Biosecurity in the Era of AI-Enabled Bioweapons Show Chinese title

Title: 人工智能时代的韧性生物安全

Jonathan Feldman, Tal Feldman

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI)

[10] arXiv:2509.02626 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: A Wrist-Worn Multimodal Reaction Time Monitoring Device for Ecologically-Valid Cognitive Assessment Show Chinese title

Title: 用于生态有效认知评估的手腕佩戴多模态反应时间监测设备

Abhigyan Sarkar, Boris Rubinsky

Subjects: Quantitative Methods (q-bio.QM)

[11] arXiv:2509.03551 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Predicting Antimicrobial Resistance (AMR) in Campylobacter, a Foodborne Pathogen, and Cost Burden Analysis Using Machine Learning Show Chinese title

Title: 使用机器学习预测弯曲菌属的抗菌药物耐药性（AMR）及其成本负担分析

Shubham Mishra, The Anh Han, Bruno Silvester Lopes, Shatha Ghareeb, Zia Ush Shamszaman

Comments: 9 pages, 3 figures, 1 table. Submitted to a Briefings in Bioinformatics journal and waiting for the outcome

Subjects: Quantitative Methods (q-bio.QM) ; Machine Learning (cs.LG)

[12] arXiv:2509.03681 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: ALBATROSS: Cheap Filtration Based Geometry via Stochastic Sub-Sampling Show Chinese title

Title: ALBATROSS：基于随机子采样的廉价过滤几何方法

Andrew J. Stier, Naichen Shi, Raed Al Kontar, Chad Giusti, Marc G. Berman

Subjects: Quantitative Methods (q-bio.QM)

[13] arXiv:2509.04939 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: The SChISM study: Cell-free DNA size profiles as predictors of progression in advanced carcinoma treated with immune-checkpoint inhibitors Show Chinese title

Title: SChISM研究：无细胞DNA片段大小谱型作为晚期癌瘤接受免疫检查点抑制剂治疗进展的预测因子

Linh Nguyen Phuong (COMPO), Frederic Fina, Laurent Greillier (COMPO, APHM), Pascale Tomasini (APHM, COMPO), Jean-Laurent Deville (TIMONE), Romain Zakrasjek (COMPO), Lucie Della-Negra (COMPO), Audrey Boutonnet, Frédéric Ginot, Jean-Charles Garcia, Sébastien Benzekry (COMPO), Sébastien Salas (COMPO, TIMONE)

Subjects: Quantitative Methods (q-bio.QM)

[14] arXiv:2509.05189 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Resolving Tangling in Multi-Conformer Refinement via Iterative Projections Show Chinese title

Title: 通过迭代投影解决多构象精修中的纠缠问题

Avinash Mandaiya, Veit Elser

Subjects: Quantitative Methods (q-bio.QM) ; Optimization and Control (math.OC) ; Computational Physics (physics.comp-ph)

[15] arXiv:2509.05309 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: ProtSAE: Disentangling and Interpreting Protein Language Models via Semantically-Guided Sparse Autoencoders Show Chinese title

Title: ProtSAE：通过语义引导的稀疏自编码器解耦和解释蛋白质语言模型

Xiangyu Liu, Haodi Lei, Yi Liu, Yang Liu, Wei Hu

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Computation and Language (cs.CL)

[16] arXiv:2509.05846 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Comparative study of Bayesian and Frequentist methods for epidemic forecasting: Insights from simulated and historical data Show Chinese title

Title: 贝叶斯方法与频率学派方法在流行病预测中的比较研究：来自模拟数据和历史数据的见解

Hamed Karami, Ruiyan Luo, Pejman Sanaei, Gerardo Chowell

Subjects: Quantitative Methods (q-bio.QM)

[17] arXiv:2509.06192 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Hybrid restricted master problem for Boolean matrix factorisation Show Chinese title

Title: 布尔矩阵分解的混合受限主问题

Ellen Visscher, Michael Forbes, Christopher Yau

Subjects: Quantitative Methods (q-bio.QM)

[18] arXiv:2509.06735 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Data-driven discovery of dynamical models in biology Show Chinese title

Title: 数据驱动的生物学动力学模型发现

Bartosz Prokop, Lendert Gelens

Comments: 26 pages, 5 figures, 6 Info boxes

Subjects: Quantitative Methods (q-bio.QM)

[19] arXiv:2509.08013 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Mathematical Discovery of Potential Therapeutic Targets: Application to Rare Melanomas Show Chinese title

Title: 潜在治疗靶点的数学发现：应用于罕见黑色素瘤

Mahya Aghaee (1), Victoria Cicchirillo+ (2), Kyle Adams (3), Alberto Riva (4), Rebecca Nance-Richey (2), William Hager (3), Ashley N. Brown (5), Elias Sayour (6), Domenico Santoro (2), Rowan Milner (2), Bently Doonan (7), Helen Moore (1) ((1) Department of Medicine, College of Medicine, University of Florida, Gainesville, Florida, USA. (2) Small Animal Clinical Sciences, College of Veterinary Medicine, University of Florida, Gainesville, Florida, USA. (3) Department of Mathematics, College of Liberal Arts and Sciences, University of Florida, Gainesville, Florida, USA. (4) ICBR Bioinformatics Core Facility, University of Florida, Gainesville, Florida, USA. (5) Institute for Therapeutic Innovation, Department of Medicine, College of Medicine, University of Florida, Orlando, Florida, USA. (6) Department of Neurosurgery, College of Medicine, University of Florida, Gainesville, Florida, USA. (7) Division of Hematology and Oncology, College of Medicine, Mayo Clinic, Jacksonville, FL USA. (8) Division of Hematology and Oncology, College of Medicine, Mayo Clinic, Jacksonville, FL, USA)

Subjects: Quantitative Methods (q-bio.QM)

[20] arXiv:2509.08020 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Towards Scalable Proteomics: Opportunistic SMC Samplers on HTCondor Show Chinese title

Title: 面向可扩展蛋白质组学：在HTCondor上的机会性SMC采样器

Matthew Carter, Lee Devlin, Alexander Philips, Edward Pyzer-Knapp, Paul Spirakis, Simon Maskell

Subjects: Quantitative Methods (q-bio.QM) ; Distributed, Parallel, and Cluster Computing (cs.DC) ; Computation (stat.CO)

[21] arXiv:2509.09740 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: HypoGeneAgent: A Hypothesis Language Agent for Gene-Set Cluster Resolution Selection Using Perturb-seq Datasets Show Chinese title

Title: HypoGeneAgent：一种假设语言代理，用于使用扰动测序数据集进行基因集聚类分辨率选择

Ying Yuan, Xing-Yue Monica Ge, Aaron Archer Waterman, Tommaso Biancalani, David Richmond, Yogesh Pandit, Avtar Singh, Russell Littman, Jin Liu, Jan-Christian Huetter, Vladimir Ermakov

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Computation and Language (cs.CL) ; Machine Learning (cs.LG)

[22] arXiv:2509.11023 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Quantifying topological features and irregularities in zebrafish patterns using the sweeping-plane filtration Show Chinese title

Title: 使用扫平面过滤方法量化斑马鱼图案中的拓扑特征和不规则性

Nour Khoudari, John Nardini, Alexandria Volkening

Comments: 40 pages, 17 figures

Subjects: Quantitative Methods (q-bio.QM)

[23] arXiv:2509.11083 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: An Alignment-Free Explanation for Collective Predator Evasion in Moving Animal Groups Show Chinese title

Title: 无对齐解释用于移动动物群体中的集体捕食者逃避

Daniel Strömbom, Catherine Futterman

Comments: 12 pages, 6 figures

Journal-ref: Strombom D, Futterman C. An Alignment-Free Explanation for Collective Predator Evasion in Moving Animal Groups. Dynamics. 2023; 3(4):793-802

Subjects: Quantitative Methods (q-bio.QM)

[24] arXiv:2509.11354 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Intelligent Software System for Low-Cost, Brightfield Segmentation: Algorithmic Implementation for Cytometric Auto-Analysis Show Chinese title

Title: 低成本明场分割智能软件系统：细胞计数自动分析的算法实现

Surajit Das, Pavel Zun

Subjects: Quantitative Methods (q-bio.QM) ; Computer Vision and Pattern Recognition (cs.CV) ; Image and Video Processing (eess.IV) ; Cell Behavior (q-bio.CB)

[25] arXiv:2509.12131 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Neural networks for learning macroscopic chemotactic sensitivity from microscopic models Show Chinese title

Title: 从微观模型中学习宏观趋化敏感性的神经网络

Radek Erban

Subjects: Quantitative Methods (q-bio.QM) ; Biological Physics (physics.bio-ph)

[26] arXiv:2509.13044 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: ORCA: A Comprehensive AI-Driven Platform for Digital Pathology Analysis and Biomarker Discovery Show Chinese title

Title: ORCA：用于数字病理分析和生物标志物发现的综合人工智能驱动平台

Noor Shaker, Mohamed AbouZleikha, Nuha Shaker

Comments: 15 pages, 4 figures

Subjects: Quantitative Methods (q-bio.QM)

[27] arXiv:2509.13376 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Unleashing the power of computational insights in revealing the complexity of biological systems in the new era of spatial multi-omics Show Chinese title

Title: 在空间多组学新时代，释放计算见解的力量以揭示生物系统的复杂性

Zhiwei Fan, Tiangang Wang, Kexin Huang, Binwu Ying, Xiaobo Zhou

Comments: 43 pages, 9 figures, 1 table

Subjects: Quantitative Methods (q-bio.QM) ; Machine Learning (cs.LG)

[28] arXiv:2509.14287 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Property-Isometric Variational Autoencoders for Sequence Modeling and Design Show Chinese title

Title: 属性等距变分自编码器用于序列建模和设计

Elham Sadeghi, Xianqi Deng, I-Hsin Lin, Stacy M. Copp, Petko Bogdanov

Comments: 20 pages, 6 figures, preprint

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Machine Learning (cs.LG)

[29] arXiv:2509.14862 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Modelling species distributions using remote sensing predictors: Comparing Dynamic Habitat Index and LULC Show Chinese title

Title: 使用遥感预测因子建模物种分布：比较动态生境指数和土地利用/土地覆盖

Maïri Souza Oliveira, Clémentine Préau, Samuel Alleaume, Maxime Lenormand, Sandra Luque

Comments: 27 pages, 7 figures + Appendix

Journal-ref: Ecological Indicators 179, 114198 (2025)

Subjects: Quantitative Methods (q-bio.QM) ; Populations and Evolution (q-bio.PE)

[30] arXiv:2509.16301 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: TF-DWGNet: A Directed Weighted Graph Neural Network with Tensor Fusion for Multi-Omics Cancer Subtype Classification Show Chinese title

Title: TF-DWGNet：一种用于多组学癌症亚型分类的有向加权图神经网络与张量融合

Tiantian Yang, Zhiqian Chen

Comments: 9 pages, 4 figures, 4 tables

Subjects: Quantitative Methods (q-bio.QM) ; Machine Learning (cs.LG)

[31] arXiv:2509.16486 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Comment on "mbtransfer: Microbiome intervention analysis using transfer functions and mirror statistics": Implementation errors, theoretical misapplication, and methodological flaws Show Chinese title

Title: 对“mbtransfer：使用转移函数和镜像统计进行微生物组干预分析”的评论：实现错误、理论误用和方法学缺陷

Travis E. Gibson

Comments: 10 pages, 2 figures. Comment on arXiv:2306.06364, with the published version in PLOS Computational Biology as doi:10.1371/journal.pcbi.1012196

Subjects: Quantitative Methods (q-bio.QM)

[32] arXiv:2509.16571 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Enhancing Antimicrobial Molecule Prediction via Dynamic Routing Capsule Networks and Multi-Source Molecular Embeddings Show Chinese title

Title: 通过动态路由胶囊网络和多源分子嵌入增强抗菌分子预测

R. He

Subjects: Quantitative Methods (q-bio.QM)

[33] arXiv:2509.16908 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Discrete Heat Kernels on Simplicial Complexes and Its Application to Functional Brain Networks Show Chinese title

Title: 离散热核在单纯复形上的应用及其在功能脑网络中的应用

Sixtus Dakurah

Subjects: Quantitative Methods (q-bio.QM) ; Neurons and Cognition (q-bio.NC)

[34] arXiv:2509.17594 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: A Sensitivity Analysis Methodology for Rule-Based Stochastic Chemical Systems Show Chinese title

Title: 基于规则的随机化学系统的敏感性分析方法论

Erika M. Herrera Machado, Jakob L. Andersen, Rolf Fagerberg, Daniel Merkle

Subjects: Quantitative Methods (q-bio.QM) ; Molecular Networks (q-bio.MN)

[35] arXiv:2509.18050 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Why we need all the organisms: an exploration of the Monarch knowledge graph to aid mechanism discovery Show Chinese title

Title: 为什么我们需要所有生物：探索帝王蝶知识图谱以辅助机制发现

Katherina Cortes, Daniel Korn, Sarah Gehrke, Kevin Schaper, Corey Cox, Patrick Golden, Aaron Odell, Bryan Laraway, Madan Krishnamurthy, Justin Reese, Harry Caufield, Sierra Moxon, Ellen Elias, Christopher J Mungall, Melissa Haendel

Subjects: Quantitative Methods (q-bio.QM)

[36] arXiv:2509.18220 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Virtual Cells: From Conceptual Frameworks to Biomedical Applications Show Chinese title

Title: 虚拟细胞：从概念框架到生物医学应用

Saurabh Bhardwaj, Gaurav Kumar, Haochen Yang, Shaurya Bhardwaj, Qun Wang, Minjie Shen, Yizhi Wang, Cristabelle Madona De Souza

Comments: 54 Pages, 7 Figures

Subjects: Quantitative Methods (q-bio.QM)

[37] arXiv:2509.18225 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Rank Ordering of Species Sensitivities to Chemicals: Discrepancies between Behavioral and Lethal Responses in Freshwater and Marine Invertebrates Show Chinese title

Title: 物种对化学物质敏感性的等级排序：淡水和海洋无脊椎动物行为反应与致死反应之间的差异

Julien Mocq (RiverLy), George Ruck (RiverLy), Michaël Demortier (RiverLy), Flavie Brun (RiverLy), Romain Coulaud (SEBIO), Olivier Geffard (RiverLy), Arnaud Chaumot (RiverLy)

Journal-ref: Environmental Science and Technology, 2025

Subjects: Quantitative Methods (q-bio.QM)

[38] arXiv:2509.18228 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Forest tree species classification and entropy-derived uncertainty mapping using extreme gradient boosting and Sentinel-1/2 data Show Chinese title

Title: 基于极端梯度提升和Sentinel-1/2数据的森林树种分类和熵推导的不确定性制图

Abdulhakim M. Abdi, Fan Wang

Comments: 24 pages, 6 figures, 2 tables

Subjects: Quantitative Methods (q-bio.QM) ; Machine Learning (stat.ML)

[39] arXiv:2509.19399 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Deep Clustering for Blood Cell Classification and Quantification Show Chinese title

Title: 深度聚类用于血细胞分类和量化

Mihaela Macarie-Ancau, Adrian Groza

Subjects: Quantitative Methods (q-bio.QM)

[40] arXiv:2509.19536 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Integrating Mechanistic Modeling and Machine Learning to Study CD4+/CD8+ CAR-T Cell Dynamics with Tumor Antigen Regulation Show Chinese title

Title: 将机制建模与机器学习相结合，研究CD4+/CD8+ CAR-T细胞动力学与肿瘤抗原调控

Saranya Varakunan, Melissa Stadt, Mohammad Kohandel

Comments: 26 pages, 8 figures

Subjects: Quantitative Methods (q-bio.QM) ; Cell Behavior (q-bio.CB)

[41] arXiv:2509.19766 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Dynamicasome: a molecular dynamics-guided and AI-driven pathogenicity prediction catalogue for all genetic mutations Show Chinese title

Title: 动态一些：一种分子动力学引导和人工智能驱动的全部遗传突变致病性预测目录

Naeyma N Islam, Mathew A Coban, Jessica M Fuller, Caleb Weber, Rohit Chitale, Benjamin Jussila, Trisha J. Brock, Cui Tao, Thomas R Caulfield

Comments: 14 pages , 6 Figures, 2 Tables

Journal-ref: Communications Biology (Nature) (2025) 8:958

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Biological Physics (physics.bio-ph) ; Molecular Networks (q-bio.MN)

[42] arXiv:2509.20402 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Transformer-Based Hematological Malignancy Prediction from Peripheral Blood Smears in a Real-World Cohort Show Chinese title

Title: 基于Transformer的现实世界队列中从外周血涂片预测血液系统恶性肿瘤

Muhammed Furkan Dasdelen, Ivan Kukuljan, Peter Lienemann, Fatih Ozlugedik, Ario Sadafi, Matthias Hehr, Karsten Spiekermann, Christian Pohlkamp, Carsten Marr

Comments: 17 pages, 6 figures

Subjects: Quantitative Methods (q-bio.QM)

[43] arXiv:2509.21132 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Detecting disease progression from animal movement using hidden Markov models Show Chinese title

Title: 使用隐马尔可夫模型从动物运动中检测疾病进展

Dongmin Kim, Théo Michelot, Katherine Mertes, Jared A. Stabach, John Fieberg

Subjects: Quantitative Methods (q-bio.QM) ; Applications (stat.AP)

[44] arXiv:2509.22853 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Patient-specific Biomolecular Instruction Tuning Show Chinese title

Title: 患者特异性生物分子指令调优

Irsyad Adam, Zekai Chen, David Laub, Shaun Porwal, Arda Pekis, Kevin Brown

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Computation and Language (cs.CL) ; Machine Learning (cs.LG)

[45] arXiv:2509.22920 (cross-list from q-bio.QM) [cn-pdf, pdf, other]

Title: Beyond the Clinic: A Large-Scale Evaluation of Augmenting EHR with Wearable Data for Diverse Health Prediction Show Chinese title

Title: 超越临床：利用可穿戴数据增强电子健康记录在多种健康预测中的大规模评估

Will Ke Wang, Rui Yang, Chao Pang, Karthik Natarajan, Nan Liu, Daniel McDuff, David Slotwiner, Fei Wang, Xuhai Orson Xu

Subjects: Quantitative Methods (q-bio.QM)

[46] arXiv:2509.22950 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Twin Peaks: Dual-Head Architecture for Structure-Free Prediction of Protein-Protein Binding Affinity and Mutation Effects Show Chinese title

Title: 双峰：用于蛋白质-蛋白质结合亲和力和突变效应的无结构预测的双头架构

Supantha Dey, Ratul Chowdhury

Subjects: Quantitative Methods (q-bio.QM)

[47] arXiv:2509.23445 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: Uncertainty Quantification of Bacterial Microcompartment Permeability Show Chinese title

Title: 细菌微区室渗透性的不确定性量化

Andre Archer, Brett J. Palmero, Charlotte Abrahamson, Carolyn E. Mills, Nolan W. Kennedy, Danielle Tullman-Ercek, Niall M. Mangan

Comments: 30 pages, 7 figures

Subjects: Quantitative Methods (q-bio.QM) ; Subcellular Processes (q-bio.SC)

[48] arXiv:2509.23847 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: 13CFLUX - Third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis Show Chinese title

Title: 13CFLUX - 第三代用于同位素（非）稳态13C代谢通量分析的高性能引擎

Anton Stratmann, Martin Beyß, Johann F. Jadebeck, Wolfgang Wiechert, Katharina Nöh

Subjects: Quantitative Methods (q-bio.QM)

[49] arXiv:2509.24262 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: LAMP-PRo: Label-aware Attention for Multi-label Prediction of DNA- and RNA-binding Proteins using Protein Language Models Show Chinese title

Title: LAMP-PRo：使用蛋白质语言模型进行DNA和RNA结合蛋白多标签预测的标签感知注意力

Nimisha Ghosh, Dheeran Sankaran, Rahul Balakrishnan Adhi, Sharath S, Amrut Anand

Subjects: Quantitative Methods (q-bio.QM) ; Artificial Intelligence (cs.AI) ; Machine Learning (cs.LG)

[50] arXiv:2509.24952 (cross-list from q-bio.QM) [cn-pdf, pdf, html, other]

Title: De novo peptide sequencing rescoring and FDR estimation with Winnow Show Chinese title

Title: 从头肽测序重新评分和FDR估计与Winnow

Amandla Mabona, Jemma Daniel, Henrik Servais Janssen Knudsen, Rachel Catzel, Kevin Michael Eloff, Erwin M. Schoof, Nicolas Lopez Carranza, Timothy P. Jenkins, Jeroen Van Goey, Konstantinos Kalogeropoulos

Subjects: Quantitative Methods (q-bio.QM)